To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gQTLstats")

In most cases, you don't need to download the package archive at all.

gQTLstats

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see gQTLstats.

gQTLstats: computationally efficient analysis for eQTL and allied studies

Bioconductor version: 3.2

computationally efficient analysis of eQTL, mQTL, dsQTL, etc.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gQTLstats")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gQTLstats")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gQTLstats")

HTML		gQTLstats: statistics for genetics of genomic features
PDF		Reference Manual

biocViews	Software
Version	1.2.0
In Bioconductor since	BioC 3.1 (R-3.2) (1 year)
License	Artistic-2.0
Depends	R (>= 3.1.0)
Imports	methods, snpStats, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, SummarizedExperiment, VariantAnnotation, Biobase, BatchJobs, gQTLBase, limma, gam, dplyr, AnnotationDbi, GenomicFeatures, ggplot2, reshape2, doParallel, foreach, ffbase
LinkingTo
Suggests	geuvPack, geuvStore, Rsamtools, knitr, rmarkdown, ggbio, BiocStyle, Homo.sapiens
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	gwascat
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	gQTLstats_1.2.0.tar.gz
Windows Binary	gQTLstats_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)	gQTLstats_1.2.0.tgz
Mac OS X 10.9 (Mavericks)	gQTLstats_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/gQTLstats/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/gQTLstats/
Package Downloads Report	Download Stats

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