To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

In most cases, you don't need to download the package archive at all.

snpStats

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see snpStats.

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 3.2

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

Citation (from within R, enter citation("snpStats")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")

PDF		Data input
PDF		Fst
PDF		Imputation and meta-analysis
PDF		LD statistics
PDF		Principal components analysis
PDF		snpMatrix-differences
PDF		snpStats introduction
PDF		TDT tests
PDF		Reference Manual

biocViews	GeneticVariability, Microarray, SNP, Software
Version	1.20.0
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	GPL-3
Depends	R (>= 2.10.0), survival, Matrix, methods
Imports	graphics, grDevices, stats, utils, BiocGenerics, zlibbioc
LinkingTo
Suggests	hexbin
SystemRequirements
Enhances
URL
Depends On Me	GGBase, GGdata, ggtut
Imports Me	FunciSNP, GGtools, gQTLstats, gwascat, ldblock, MEAL
Suggests Me	crlmm, GWASTools, VariantAnnotation
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	snpStats_1.20.0.tar.gz
Windows Binary	snpStats_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	snpStats_1.20.0.tgz
Mac OS X 10.9 (Mavericks)	snpStats_1.20.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/snpStats/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/snpStats/
Package Downloads Report	Download Stats