flowCore
flowCore: Basic structures for flow cytometry data
Bioconductor version: Release (3.20)
Provides S4 data structures and basic functions to deal with flow cytometry data.
Author: B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nolwenn Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb]
Maintainer: Mike Jiang <mike at ozette.com>
Citation (from within R, enter
citation("flowCore")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowCore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowCore")| Basic Functions for Flow Cytometry Data | R Script | |
| fcs3.html | HTML | |
| hyperlog.notice.html | HTML | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software |
| Version | 2.18.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | Biobase, BiocGenerics(>= 0.29.2), grDevices, graphics, methods, stats, utils, stats4, Rcpp, matrixStats, cytolib(>= 2.13.1), S4Vectors |
| System Requirements | GNU make, C++11 |
| URL |
See More
| Suggests | Rgraphviz, flowViz, flowStats(>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra |
| Linking To | cpp11, BH (>= 1.81.0.0), cytolib, RProtoBufLib |
| Enhances | |
| Depends On Me | flowBeads, flowBin, flowClean, flowCut, flowFP, flowMatch, flowTime, flowTrans, flowVS, flowViz, ggcyto, immunoClust, infinityFlow, ncdfFlow, HDCytoData, healthyFlowData, highthroughputassays |
| Imports Me | CATALYST, CytoMDS, CytoML, CytoPipelineGUI, CytoPipeline, FlowSOM, GateFinder, MAPFX, MetaCyto, PeacoQC, Sconify, cmapR, cyanoFilter, cydar, cytoMEM, cytofQC, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowGate, flowMeans, flowPloidy, flowSpecs, flowStats, flowTrans, flowViz, flowWorkspace, scDataviz, scifer, tidyFlowCore, tidytof |
| Suggests Me | COMPASS, flowPeaks, flowPloidyData, hypergate, segmenTier |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowCore_2.18.0.tar.gz |
| Windows Binary (x86_64) | flowCore_2.18.0.zip |
| macOS Binary (x86_64) | flowCore_2.18.0.tgz |
| macOS Binary (arm64) | flowCore_2.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowCore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowCore |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowCore/ |
| Package Short Url | https://bioconductor.org/packages/flowCore/ |
| Package Downloads Report | Download Stats |