Rgraphviz

Provides plotting capabilities for R graph objects

Bioconductor version: Release (3.20)

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("Rgraphviz")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rgraphviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rgraphviz")

A New Interface to Plot Graphs Using Rgraphviz	PDF	R Script
How To Plot A Graph Using Rgraphviz	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, Software, Visualization
Version	2.50.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 19.5 years)
License	EPL
Depends	R (>= 2.6.0), methods, utils, graph, grid
Imports	stats4, graphics, grDevices
System Requirements	optionally Graphviz (>= 2.16)
URL

Suggests	RUnit, BiocGenerics, XML
Linking To
Enhances
Depends On Me	BioMVCClass, CellNOptR, MineICA, ROntoTools, SplicingGraphs, biocGraph, netresponse, paircompviz, pathRender, maEndToEnd, dlsem, gridGraphviz, GUIProfiler, hasseDiagram
Imports Me	CytoML, DEGraph, EnrichDO, EnrichmentBrowser, GOstats, GeneNetworkBuilder, KEGGgraph, MIRit, OncoSimulR, Pigengene, SGCP, TRONCO, apComplex, biocGraph, bnem, chimeraviz, dce, flowWorkspace, hyperdraw, mirIntegrator, mnem, ontoProc, paircompviz, pathview, qpgraph, abn, agena.ai, BCDAG, BiDAG, bnpa, bnRep, ceg, CePa, classGraph, cogmapr, ontologyPlot, SEMgraph, stablespec
Suggests Me	CNORfeeder, CNORfuzzy, Category, DEGraph, GSEABase, GlobalAncova, MLP, NCIgraph, OmnipathR, RBGL, RBioinf, Rtreemix, SPIA, Streamer, a4, altcdfenvs, annotate, flowCore, geneplotter, globaltest, rBiopaxParser, safe, topGO, vtpnet, NCIgraphData, SNAData, arulesViz, BayesNetBP, bnlearn, bnstruct, bsub, ChoR, CodeDepends, gbutils, GeneNet, HEMDAG, iTOP, kpcalg, kst, lava, loon, maGUI, micd, multiplex, ParallelPC, pcalg, pchc, pks, psych, relations, rEMM, rPref, rSpectral, SCCI, sisal, textplot, tm, topologyGSA, tpc, unifDAG, zenplots
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rgraphviz_2.50.0.tar.gz
Windows Binary (x86_64)	Rgraphviz_2.50.0.zip (64-bit only)
macOS Binary (x86_64)	Rgraphviz_2.50.0.tgz
macOS Binary (arm64)	Rgraphviz_2.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rgraphviz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rgraphviz
Bioc Package Browser	https://code.bioconductor.org/browse/Rgraphviz/
Package Short Url	https://bioconductor.org/packages/Rgraphviz/
Package Downloads Report	Download Stats