To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affylmGUI")

In most cases, you don't need to download the package archive at all.

affylmGUI

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see affylmGUI.

GUI for limma package with Affymetrix microarrays

Bioconductor version: 3.2

A Graphical User Interface for analysis of Affymetrix microarray gene expression data using the affy and limma Microarray packages

Author: James Wettenhall [aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb], Yifang Hu [ctb]

Maintainer: Yifang Hu <hu at wehi.edu.au>, Keith Satterley <keith at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affylmGUI")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")

PDF		affylmGUI Vignette
PDF		Extracting affy and limma objects from affylmGUI files
PDF		Reference Manual

biocViews	BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version	1.44.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 11 years)
License	GPL (>=2)
Depends
Imports	limma, tcltk, affy, BiocInstaller, affyio, tkrplot, affyPLM, R2HTML, xtable, gcrma, AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://bioinf.wehi.edu.au/affylmGUI/
Depends On Me	oneChannelGUI
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	affylmGUI_1.44.0.tar.gz
Windows Binary	affylmGUI_1.44.0.zip
Mac OS X 10.6 (Snow Leopard)	affylmGUI_1.44.0.tgz
Mac OS X 10.9 (Mavericks)	affylmGUI_1.44.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/affylmGUI/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/affylmGUI/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: