simpIntLists

DOI: 10.18129/B9.bioc.simpIntLists    

The package contains BioGRID interactions for various organisms in a simple format

Bioconductor version: Release (3.6)

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("simpIntLists")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simpIntLists")

 

PDF	R Script	simpIntLists
PDF		Reference Manual

Details

biocViews	Arabidopsis_thaliana_Data, ExperimentData
Version	1.14.0
License	GPL (>= 2)
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	ibh
Imports Me
Suggests Me	GeneNetworkBuilder
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	simpIntLists_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/simpIntLists
Package Short Url	http://bioconductor.org/packages/simpIntLists/
Package Downloads Report	Download Stats