pathprintGEOData

DOI: 10.18129/B9.bioc.pathprintGEOData    

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

Bioconductor version: Release (3.6)

Pathway Fingerprint vectors that have been pre-calculated for ~160,000 publicly available arrays from the GEO corpus, spanning 6 species and 31 platforms, together with their associated metadata.

Author: Gabriel Altschuler

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathprintGEOData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathprintGEOData")

 

PDF	R Script	pathprintGEOData
PDF		Reference Manual

Details

biocViews	Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data, OneChannelData, PathwayInteractionDatabase, Rattus_norvegicus_Data, SequencingData, TwoChannelData
Version	1.4.0
License	GPL
Depends	R (>= 3.4)
Imports
LinkingTo
Suggests	pathprint, SummarizedExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	pathprint
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pathprintGEOData_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/pathprintGEOData
Package Short Url	http://bioconductor.org/packages/pathprintGEOData/
Package Downloads Report	Download Stats