lumiBarnes

DOI: 10.18129/B9.bioc.lumiBarnes    

Barnes Benchmark Illumina Tissues Titration Data

Bioconductor version: Release (3.6)

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Author: Pan Du

Maintainer: Pan Du <dupan at northwestern.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("lumiBarnes")

Documentation

PDF		Reference Manual

Details

biocViews	ChipOnChipData, ExperimentData, MicroarrayData, Tissue
Version	1.18.0
License	LGPL
Depends	R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	arrayMvout, lumi
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	lumiBarnes_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/lumiBarnes
Package Short Url	http://bioconductor.org/packages/lumiBarnes/
Package Downloads Report	Download Stats