tenXplore

DOI: 10.18129/B9.bioc.tenXplore    

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: Release (3.6)

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tenXplore")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")

 

PDF	R Script	tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons
PDF		Reference Manual

Details

biocViews	DimensionReduction, PrincipalComponent, SingleCell, Software, Transcriptomics
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 3.4), shiny, restfulSE(>= 0.99.12)
Imports	methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils
LinkingTo
Suggests	org.Hs.eg.db, testthat, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tenXplore_1.0.0.tar.gz
Windows Binary	tenXplore_1.0.0.zip
Mac OS X 10.11 (El Capitan)	tenXplore_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tenXplore
Package Short Url	http://bioconductor.org/packages/tenXplore/
Package Downloads Report	Download Stats