Rqc

DOI: 10.18129/B9.bioc.Rqc    

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: Release (3.6)

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rqc")

Documentation

HTML	R Script	Using Rqc
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, QualityControl, Sequencing, Software
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	GPL (>= 2)
Depends	BiocParallel, ShortRead, ggplot2
Imports	BiocGenerics, Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, digest, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles
LinkingTo	Rcpp
Suggests	testthat
SystemRequirements
Enhances
URL	https://github.com/labbcb/Rqc
BugReports	https://github.com/labbcb/Rqc/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rqc_1.12.0.tar.gz
Windows Binary	Rqc_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	Rqc_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rqc
Package Short Url	http://bioconductor.org/packages/Rqc/
Package Downloads Report	Download Stats