IntramiRExploreR

DOI: 10.18129/B9.bioc.IntramiRExploreR    

Predicting Targets for Drosophila Intragenic miRNAs

Bioconductor version: Release (3.6)

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Author: Surajit Bhattacharya and Daniel Cox

Maintainer: Surajit Bhattacharya <sbhattacharya3 at student.gsu.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IntramiRExploreR")

Documentation

HTML	R Script	IntramiRExploreR
PDF		Reference Manual

Details

biocViews	GeneExpression, GenePrediction, GeneTarget, Microarray, Software, StatisticalMethod
Version	1.0.0
License	GPL-2
Depends	R (>= 3.4)
Imports	igraph (>= 1.0.1), FGNet(>= 3.0.7), knitr (>= 1.12.3), stats, utils, grDevices, graphics
LinkingTo
Suggests	RDAVIDWebService, gProfileR, topGO, KEGGprofile, org.Dm.eg.db, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/sbhattacharya3/IntramiRExploreR/
BugReports	https://github.com/sbhattacharya3/IntramiRExploreR/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IntramiRExploreR_1.0.0.tar.gz
Windows Binary	IntramiRExploreR_1.0.0.zip
Mac OS X 10.11 (El Capitan)	IntramiRExploreR_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IntramiRExploreR
Package Short Url	http://bioconductor.org/packages/IntramiRExploreR/
Package Downloads Report	Download Stats