BioCor

DOI: 10.18129/B9.bioc.BioCor    

Functional similarities

Bioconductor version: Release (3.6)

Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...

Author: Lluís Revilla Sancho <lluis.revilla at gmail.com>

Maintainer: Lluís Revilla Sancho <lluis.revilla at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioCor")

Documentation

HTML	R Script	About BioCor
HTML	R Script	Advanced usage of BioCor
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Clustering, GeneExpression, Network, NetworkEnrichment, Pathways, Software, StatisticalMethod, SystemsBiology
Version	1.2.1
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	GPL-3 + file LICENSE
Depends	R (>= 3.4.0)
Imports	BiocParallel, Matrix
LinkingTo
Suggests	reactome.db, org.Hs.eg.db, WGCNA, GOSemSim, GSEABase, testthat, knitr, rmarkdown, BiocStyle, airway, DESeq2, boot, targetscan.Hs.eg.db, Hmisc
SystemRequirements
Enhances
URL	https://github.com/llrs/BioCor/
BugReports	https://github.com/llrs/BioCor/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioCor_1.2.1.tar.gz
Windows Binary	BioCor_1.2.1.zip
Mac OS X 10.11 (El Capitan)	BioCor_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioCor
Package Short Url	http://bioconductor.org/packages/BioCor/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive