NTW

This is the development version of NTW; for the stable release version, see NTW.

Predict gene network using an Ordinary Differential Equation (ODE) based method

Bioconductor version: Development (3.21)

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini

Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>

Citation (from within R, enter citation("NTW")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("NTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NTW")

NTW vignette	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Preprocessing, Software
Version	1.57.0
In Bioconductor since	BioC 2.7 (R-2.12) (14 years)
License	GPL-2
Depends	R (>= 2.3.0)
Imports	mvtnorm, stats, utils
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NTW_1.57.0.tar.gz
Windows Binary (x86_64)	NTW_1.57.0.zip
macOS Binary (x86_64)	NTW_1.57.0.tgz
macOS Binary (arm64)	NTW_1.57.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NTW
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NTW
Bioc Package Browser	https://code.bioconductor.org/browse/NTW/
Package Short Url	https://bioconductor.org/packages/NTW/
Package Downloads Report	Download Stats