TENxPBMCData

PBMC data from 10X Genomics

Bioconductor version: Release (3.20)

Single-cell RNA-seq data for on PBMC cells, generated by 10X Genomics.

Author: Kasper D. Hansen [aut], Davide Risso [aut], Milan Malfait [ctb], Jeroen Gilis [ctb], Theodore Killian [ctb], Murat Cem Kose [ctb], Chong Tang [ctb], Teun van den Brand [ctb], Dania Machlab [ctb], Stephanie Hicks [aut, cre]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("TENxPBMCData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxPBMCData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxPBMCData")

Obtaining scRNA-seq data on PBMCs from 10X Genomics	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version	1.24.0
License	CC BY 4.0
Depends	SingleCellExperiment, HDF5Array
Imports	AnnotationHub, ExperimentHub
System Requirements
URL

Suggests	rmarkdown, knitr, BiocStyle, snow, BiocFileCache, BiocParallel
Linking To
Enhances
Depends On Me	SingleRBook
Imports Me	singleCellTK
Suggests Me	adverSCarial, ASURAT, celda, concordexR, decontX, ExperimentSubset, glmGamPoi, iSEE, mbkmeans, schex, scone, scry, sketchR, transformGamPoi
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TENxPBMCData_1.24.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TENxPBMCData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENxPBMCData
Package Short Url	https://bioconductor.org/packages/TENxPBMCData/
Package Downloads Report	Download Stats