eiR
Accelerated similarity searching of small molecules
DOI: 10.18129/B9.bioc.eiR
Bioconductor version: Release (3.20)
The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.
Author: Kevin Horan, Yiqun Cao and Tyler Backman
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
Citation (from within R, enter
citation("eiR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("eiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eiR")| eiR: Accelerated Similarity Searching of Small Molecules | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| INSTALL | Text | |
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization |
| Version | 1.46.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI |
| Imports | snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9) |
| System Requirements | |
| URL | https://github.com/girke-lab/eiR |
See More
| Suggests | BiocStyle, knitcitations, knitr, knitrBootstrap, rmarkdown, RSQLite |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | eiR_1.46.0.tar.gz |
| Windows Binary (x86_64) | eiR_1.46.0.zip |
| macOS Binary (x86_64) | eiR_1.46.0.tgz |
| macOS Binary (arm64) | eiR_1.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/eiR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/eiR |
| Bioc Package Browser | https://code.bioconductor.org/browse/eiR/ |
| Package Short Url | https://bioconductor.org/packages/eiR/ |
| Package Downloads Report | Download Stats |