MouseFM

This is the development version of MouseFM; for the stable release version, see MouseFM.

In-silico methods for genetic finemapping in inbred mice


Bioconductor version: Development (3.20)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz [aut, cre] , Inken Wohlers [aut] , Hauke Busch [aut]

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Citation (from within R, enter citation("MouseFM")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseFM")
Fetch HTML R Script
Finemapping HTML R Script
Prioritization HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation
Version 1.15.5
In Bioconductor since BioC 3.12 (R-4.0) (4 years)
License GPL-3
Depends R (>= 4.0.0)
Imports httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges
System Requirements
URL
Bug Reports https://github.com/matmu/MouseFM/issues
See More
Suggests BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseFM_1.15.5.tar.gz
Windows Binary MouseFM_1.15.5.zip
macOS Binary (x86_64) MouseFM_1.15.5.tgz
macOS Binary (arm64) MouseFM_1.15.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/MouseFM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseFM
Bioc Package Browser https://code.bioconductor.org/browse/MouseFM/
Package Short Url https://bioconductor.org/packages/MouseFM/
Package Downloads Report Download Stats