Langmead B, Trapnell C, Pop M, Salzberg SL (2009). “Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.” Genome Biology, 10(3), R25. doi:10.1186/gb-2009-10-3-r25, PMID:19261174.

Au KF, Jiang H, Lin L, Xing Y, Wong WH (2010). “Detection of splice junctions from paired-end RNA-seq data by SpliceMap.” Nucleic Acids Research, 38(14), 4570–4578. doi:10.1093/nar/gkq211, PMID:20371516.

Hahne F, Lerch A, Stadler MB (????). “Rbowtie: An R wrapper for bowtie and SpliceMap short read aligners.” R package version 1.46.0.