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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("systemPipeRdata")
In most cases, you don't need to download the package archive at all.
systemPipeRdata
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see systemPipeRdata.
systemPipeRdata: NGS workflow templates and sample data
Bioconductor version: 3.2
systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.
Author: Thomas Girke
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
Citation (from within R,
enter citation("systemPipeRdata")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("systemPipeRdata")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("systemPipeRdata")
| HTML | Overview Vignette | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | Alignment, ChIPSeq, Coverage, DataImport, ExperimentData, GeneExpression, GeneSetEnrichment, Genetics, Infrastructure, MethylSeq, QualityControl, RNASeq, SNP, Sequencing |
| Version | 1.0.1 |
| License | Artistic-2.0 |
| Depends | methods |
| Imports | BiocGenerics |
| LinkingTo | |
| Suggests | RUnit, BiocStyle, knitr, rmarkdown, systemPipeR |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/tgirke/systemPipeRdata |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | systemPipeRdata_1.0.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/systemPipeRdata/ |
| Package Downloads Report | Download Stats |
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