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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AshkenazimSonChr21")
In most cases, you don't need to download the package archive at all.
AshkenazimSonChr21
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This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see AshkenazimSonChr21.
Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample
Bioconductor version: 3.2
SonVariantsChr21 is a dataset of annotated genomic variants coming from Complete Genomics whole genome sequencing. Data comes from GIAB project, Ashkenazim Trio, sample HG002 run 1. Both vcf and annotated data frame are provided.
Author: Tomasz Stokowy
Maintainer: Who to complain to <tomasz.stokowy at k2.uib.no>
Citation (from within R,
enter citation("AshkenazimSonChr21")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AshkenazimSonChr21")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AshkenazimSonChr21")
| RareVariantVis | ||
| Reference Manual |
Details
| biocViews | ExperimentData, GenomicVariation, Sequencing, WholeGenome |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | knitr, VariantAnnotation |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RareVariantVis |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | AshkenazimSonChr21_1.0.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/AshkenazimSonChr21/ |
| Package Downloads Report | Download Stats |
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