Robinson MD, McCarthy DJ and Smyth GK (2010). “edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.” Bioinformatics, 26, pp. -1.
McCarthy, J. D, Chen, Yunshun, Smyth and K. G (2012). “Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.” Nucleic Acids Research, 40(10), pp. -9.
Robinson MD and Smyth GK (2007). “Moderated statistical tests for assessing differences in tag abundance.” Bioinformatics, 23, pp. -6.
Robinson MD and Smyth GK (2008). “Small-sample estimation of negative binomial dispersion, with applications to SAGE data.” Biostatistics, 9, pp. -11.
Zhou X, Lindsay H and Robinson MD (2014). “Robustly detecting differential expression in RNA sequencing data using observation weights.” Nucleic Acids Research, 42, pp. e91.