AL S, D S, MW C, C S, SJ C and MD R (2010). “Repitools: an R package for the analysis of enrichment-based epigenomic data.” Bioinformatics, 26, pp. 1659.

MD R, D S, C S, AL S, J S, TP S and SJ C (2012). “Copy-number-aware differential analysis of quantitative DNA sequencing data.” Genome Research, 22, pp. 2393.

A R, M M, JZ S, AL S, C S, N M, CA M, SJ C and MD R (2014). “BayMeth: Improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach.” Genome Biology, 15, pp. R35.