To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Mmusculus.UCSC.mm10")

In most cases, you don't need to download the package archive at all.

BSgenome.Mmusculus.UCSC.mm10

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Mmusculus.UCSC.mm10.

Full genome sequences for Mus musculus (UCSC version mm10)

Bioconductor version: 3.2

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, Dec. 2011) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm10")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Mmusculus.UCSC.mm10")


PDF		Reference Manual

biocViews	AnnotationData, BSgenome, Genetics, Mus_musculus
Version	1.4.0
License	Artistic-2.0
Depends	BSgenome(>= 1.33.5)
Imports	BSgenome
LinkingTo
Suggests	TxDb.Mmusculus.UCSC.mm10.knownGene
SystemRequirements
Enhances
URL
Depends On Me	BSgenome.Mmusculus.UCSC.mm10.masked, DOQTL
Imports Me	BSgenome.Mmusculus.UCSC.mm10.masked
Suggests Me	BSgenome, InPAS, MiRaGE

Follow Installation instructions to use this package in your R session.

Package Source	BSgenome.Mmusculus.UCSC.mm10_1.4.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Package Short Url	http://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: