To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spliceSites")

In most cases, you don't need to download the package archive at all.

spliceSites

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see spliceSites.

A bioconductor package for exploration of alignment gap positions from RNA-seq data

Bioconductor version: 3.2

Performs splice centered analysis on RNA-seq data.

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("spliceSites")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spliceSites")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceSites")

PDF		RNA-seq
PDF		Reference Manual

biocViews	DifferentialExpression, GeneExpression, Proteomics, RNASeq, Software
Version	1.8.3
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-2
Depends	methods, rbamtools (>= 2.14.3), refGenome (>= 1.6.0), Biobase, Biostrings(>= 2.28.0)
Imports	BiocGenerics, doBy, seqLogo, IRanges
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	spliceSites_1.8.3.tar.gz
Windows Binary	spliceSites_1.8.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	spliceSites_1.7.0.tgz
Mac OS X 10.9 (Mavericks)	spliceSites_1.8.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/spliceSites/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/spliceSites/
Package Downloads Report	Download Stats

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