To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRM")

In most cases, you don't need to download the package archive at all.

rTRM

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see rTRM.

Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: 3.2

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rTRM")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

biocViews	GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version	1.8.1
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-3
Depends	R (>= 2.10), igraph (>= 1.0)
Imports	AnnotationDbi, DBI, RSQLite
LinkingTo
Suggests	RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
SystemRequirements
Enhances
URL	https://github.com/ddiez/rTRM
BugReports	https://github.com/ddiez/rTRM/issues
Depends On Me
Imports Me	rTRMui
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	rTRM_1.8.1.tar.gz
Windows Binary	rTRM_1.8.1.zip
Mac OS X 10.6 (Snow Leopard)	rTRM_1.8.0.tgz
Mac OS X 10.9 (Mavericks)	rTRM_1.8.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/rTRM/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/rTRM/
Package Downloads Report	Download Stats

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