To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("r3Cseq")
In most cases, you don't need to download the package archive at all.
r3Cseq
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see r3Cseq.
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Bioconductor version: 3.2
This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.
Author: Supat Thongjuea, MRC Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, UK <supat.thongjuea at ndcls.ox.ac.uk>
Maintainer: Supat Thongjuea <supat.thongjuea at ndcls.ox.ac.uk>
Citation (from within R,
enter citation("r3Cseq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("r3Cseq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("r3Cseq")
| r3Cseq | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Preprocessing, Sequencing, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | GPL-3 |
| Depends | GenomicRanges, Rsamtools, rtracklayer, VGAM, qvalue |
| Imports | methods, GenomeInfoDb, IRanges, Biostrings, data.table, sqldf, RColorBrewer |
| LinkingTo | |
| Suggests | BSgenome.Mmusculus.UCSC.mm9.masked, BSgenome.Mmusculus.UCSC.mm10.masked, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BSgenome.Rnorvegicus.UCSC.rn5.masked |
| SystemRequirements | |
| Enhances | |
| URL | http://r3cseq.genereg.net |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | r3Cseq_1.16.0.tar.gz |
| Windows Binary | r3Cseq_1.16.0.zip |
| Mac OS X 10.6 (Snow Leopard) | r3Cseq_1.16.0.tgz |
| Mac OS X 10.9 (Mavericks) | r3Cseq_1.16.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/r3Cseq/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/r3Cseq/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
