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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")
In most cases, you don't need to download the package archive at all.
qcmetrics
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.
A Framework for Quality Control
Bioconductor version: 3.2
The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.
Author: Laurent Gatto
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
Citation (from within R,
enter citation("qcmetrics")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qcmetrics")
| The 'qcmetrics' infrastructure for quality control and reporting | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualisation |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10) |
| Imports | Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors |
| LinkingTo | |
| Suggests | affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/lgatto/qcmetrics |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | qcmetrics_1.8.0.tar.gz |
| Windows Binary | qcmetrics_1.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | qcmetrics_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | qcmetrics_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/qcmetrics/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/qcmetrics/ |
| Package Downloads Report | Download Stats |
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