To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nethet")
In most cases, you don't need to download the package archive at all.
nethet
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see nethet.
A bioconductor package for high-dimensional exploration of biological network heterogeneity
Bioconductor version: 3.2
Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).
Author: Nicolas Staedler, Frank Dondelinger
Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>
Citation (from within R,
enter citation("nethet")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nethet")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nethet")
| nethet | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Clustering, GraphAndNetwork, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | GPL-2 |
| Depends | |
| Imports | glasso, mvtnorm, parcor, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2 |
| LinkingTo | |
| Suggests | knitr, xtable, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | nethet_1.2.0.tar.gz |
| Windows Binary | nethet_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | nethet_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | nethet_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/nethet/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/nethet/ |
| Package Downloads Report | Download Stats |
Documentation »
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