- Home
- Bioconductor 3.2
- Software Packages
- geneRecommender
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("geneRecommender")
In most cases, you don't need to download the package archive at all.
geneRecommender
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see geneRecommender.
A gene recommender algorithm to identify genes coexpressed with a query set of genes
Bioconductor version: 3.2
This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.
Author: Gregory J. Hather <ghather at stat.berkeley.edu>, with contributions from Art B. Owen <art at stat.stanford.edu> and Terence P. Speed <terry at stat.berkeley.edu>
Maintainer: Greg Hather <ghather at stat.berkeley.edu>
Citation (from within R,
enter citation("geneRecommender")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("geneRecommender")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneRecommender")
| Using the geneRecommender Package | ||
| Reference Manual |
Details
| biocViews | Clustering, Microarray, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | GPL (>= 2) |
| Depends | R (>= 1.8.0), Biobase(>= 1.4.22), methods |
| Imports | Biobase, methods, stats |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | geneRecommender_1.42.0.tar.gz |
| Windows Binary | geneRecommender_1.42.0.zip |
| Mac OS X 10.6 (Snow Leopard) | geneRecommender_1.42.0.tgz |
| Mac OS X 10.9 (Mavericks) | geneRecommender_1.42.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/geneRecommender/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/geneRecommender/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
