- Home
- Bioconductor 3.2
- Software Packages
- epigenomix
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epigenomix")
In most cases, you don't need to download the package archive at all.
epigenomix
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see epigenomix.
Epigenetic and gene transcription data normalization and integration with mixture models
Bioconductor version: 3.2
A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.
Author: Hans-Ulrich Klein, Martin Schaefer
Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>
Citation (from within R,
enter citation("epigenomix")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epigenomix")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epigenomix")
| epigenomix package vignette | ||
| Reference Manual |
Details
| biocViews | ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | LGPL-3 |
| Depends | R (>= 2.12.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment(>= 0.2.0) |
| Imports | BiocGenerics, Rsamtools, beadarray |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | epigenomix_1.10.0.tar.gz |
| Windows Binary | epigenomix_1.10.0.zip |
| Mac OS X 10.6 (Snow Leopard) | epigenomix_1.10.0.tgz |
| Mac OS X 10.9 (Mavericks) | epigenomix_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/epigenomix/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/epigenomix/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
