To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("customProDB")

In most cases, you don't need to download the package archive at all.

customProDB

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see customProDB.

Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.

Bioconductor version: 3.2

Generate customized protein sequence database from RNA-Seq data for proteomics search

Author: xiaojing wang

Maintainer: xiaojing wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("customProDB")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("customProDB")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customProDB")

PDF		Introduction to customProDB
PDF		Reference Manual
Text		NEWS

biocViews	AlternativeSplicing, MassSpectrometry, Proteomics, RNASeq, SNP, Software, Transcription
Version	1.10.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports	IRanges, GenomeInfoDb, GenomicRanges, Rsamtools(>= 1.10.2), GenomicAlignments, Biostrings(>= 2.26.3), GenomicFeatures(>= 1.17.13), biomaRt(>= 2.17.1), stringr, RCurl, plyr, VariantAnnotation(>= 1.13.44), rtracklayer, RSQLite, AnnotationDbi
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	PGA
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	customProDB_1.10.0.tar.gz
Windows Binary	customProDB_1.10.0.zip
Mac OS X 10.6 (Snow Leopard)	customProDB_1.10.0.tgz
Mac OS X 10.9 (Mavericks)	customProDB_1.10.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/customProDB/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/customProDB/
Package Downloads Report	Download Stats

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