To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cobindR")

In most cases, you don't need to download the package archive at all.

cobindR

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see cobindR.

Finding Co-occuring motifs of transcription factor binding sites

Bioconductor version: 3.2

Finding and analysing co-occuring motifs of transcription factor binding sites in groups of genes

Author: Manuela Benary, Stefan Kroeger, Yuehien Lee, Robert Lehmann

Maintainer: Manuela Benary <manuela.benary at cms.hu-berlin.de>

Citation (from within R, enter citation("cobindR")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cobindR")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cobindR")

biocViews	CellBiology, ChIPSeq, MultipleComparison, SequenceMatching, Software
Version	1.8.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	Artistic-2.0
Depends
Imports	methods, seqinr, yaml, rtfbs, gplots, mclust, gmp, BiocGenerics(>= 0.13.8), IRanges, Biostrings, BSgenome, biomaRt
LinkingTo
Suggests	RUnit
SystemRequirements
Enhances	rGADEM, seqLogo, genoPlotR, parallel, VennDiagram, RColorBrewer, vcd, MotifDb, snowfall
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	cobindR_1.8.0.tar.gz
Windows Binary	cobindR_1.8.0.zip
Mac OS X 10.6 (Snow Leopard)	cobindR_1.8.0.tgz
Mac OS X 10.9 (Mavericks)	cobindR_1.8.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/cobindR/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/cobindR/
Package Downloads Report	Download Stats

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