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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")
In most cases, you don't need to download the package archive at all.
chromDraw
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see chromDraw.
chromDraw an R package for visualization of linear and circular karyotypes.
Bioconductor version: 3.2
Package chromDraw is a simple package for linear and circular type of karyotype visualization. The linear type of visualization is usually used for demonstrating chromosomes structures in karyotype and the circular type of visualization is used for comparing of karyotypes between each other. This tool has own input data format or genomicRanges structure can be used as input. Each chromosome containing definition of blocks and centromere position. Output file formats are *.eps and *.svg.
Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University
Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>
Citation (from within R,
enter citation("chromDraw")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chromDraw")
| chromDraw | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | GPL-3 |
| Depends | R (>= 3.0.0) |
| Imports | Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46) |
| LinkingTo | Rcpp |
| Suggests | |
| SystemRequirements | Rtools (>= 3.1) |
| Enhances | |
| URL | www.plantcytogenomics.org/chromDraw |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | chromDraw_1.2.0.tar.gz |
| Windows Binary | chromDraw_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | chromDraw_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | chromDraw_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/chromDraw/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/chromDraw/ |
| Package Downloads Report | Download Stats |
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