To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Guitar")
In most cases, you don't need to download the package archive at all.
Guitar
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Guitar.
Guitar
Bioconductor version: 3.2
The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.
Author: Jia Meng
Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>
Citation (from within R,
enter citation("Guitar")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Guitar")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Guitar")
| Sample Guitar workflow | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Alignment, Coverage, DataImport, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | GPL-2 |
| Depends | Rsamtools, GenomicFeatures, rtracklayer, GenomicAlignments, GenomicRanges, ggplot2, grid, IRanges |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Guitar_1.7.0.tar.gz |
| Windows Binary | Guitar_1.7.0.zip |
| Mac OS X 10.6 (Snow Leopard) | Guitar_1.7.0.tgz |
| Mac OS X 10.9 (Mavericks) | Guitar_1.7.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Guitar/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/Guitar/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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