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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")
In most cases, you don't need to download the package archive at all.
GOSemSim
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GOSemSim.
GO-terms Semantic Similarity Measures
Bioconductor version: 3.2
Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Gondii, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.
Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Alexey Stukalov.
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R,
enter citation("GOSemSim")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOSemSim")
| HTML | GO-terms Semantic Similarity Measures | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Clustering, GO, Network, Pathways, Software |
| Version | 1.28.2 |
| In Bioconductor since | BioC 2.4 (R-2.9) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1.0) |
| Imports | Rcpp, AnnotationDbi, GO.db |
| LinkingTo | Rcpp |
| Suggests | DOSE, clusterProfiler, org.Hs.eg.db, knitr, BiocStyle, BiocInstaller |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/GuangchuangYu/GOSemSim |
| BugReports | https://github.com/GuangchuangYu/GOSemSim/issues |
| Depends On Me | tRanslatome |
| Imports Me | clusterProfiler, DOSE, Rcpi |
| Suggests Me | SemDist |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GOSemSim_1.28.2.tar.gz |
| Windows Binary | GOSemSim_1.28.2.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | GOSemSim_1.28.1.tgz |
| Mac OS X 10.9 (Mavericks) | GOSemSim_1.28.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GOSemSim/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/GOSemSim/ |
| Package Downloads Report | Download Stats |
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