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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GEOsearch")
In most cases, you don't need to download the package archive at all.
GEOsearch
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GEOsearch.
GEOsearch
Bioconductor version: 3.2
GEOsearch is an extendable search engine for NCBI GEO (Gene Expression Omnibus). Instead of directly searching the term, GEOsearch can find all the gene names contained in the search term and search all the alias of the gene names simultaneously in GEO database. GEOsearch also provides other functions such as summarizing common biology keywords in the search results.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
Citation (from within R,
enter citation("GEOsearch")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GEOsearch")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GEOsearch")
| GEOsearch: Extendable Search Engine for Gene Expression Omnibus | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GUI, Software |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | GPL(>=2) |
| Depends | R (>= 3.2) |
| Imports | org.Hs.eg.db, org.Mm.eg.db |
| LinkingTo | |
| Suggests | knitr, shiny, DT, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GEOsearch_1.0.1.tar.gz |
| Windows Binary | GEOsearch_1.0.1.zip |
| Mac OS X 10.6 (Snow Leopard) | GEOsearch_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | GEOsearch_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GEOsearch/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/GEOsearch/ |
| Package Downloads Report | Download Stats |
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