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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")
In most cases, you don't need to download the package archive at all.
EnrichedHeatmap
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This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see EnrichedHeatmap.
Making Enriched Heatmaps
Bioconductor version: 3.2
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement Enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("EnrichedHeatmap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EnrichedHeatmap")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EnrichedHeatmap")
| HTML | Make Enriched Heatmaps | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, GenomeAnnotation, Sequencing, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.2), grid, ComplexHeatmap(>= 1.4.0), GenomicRanges, IRanges, locfit |
| Imports | methods, matrixStats, stats |
| LinkingTo | |
| Suggests | testthat (>= 0.3), knitr, markdown, circlize (>= 0.3.1) |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/jokergoo/EnrichedHeatmap |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | EnrichedHeatmap_1.0.0.tar.gz |
| Windows Binary | EnrichedHeatmap_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | EnrichedHeatmap_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | EnrichedHeatmap_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/EnrichedHeatmap/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/EnrichedHeatmap/ |
| Package Downloads Report | Download Stats |
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