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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNABarcodes")
In most cases, you don't need to download the package archive at all.
DNABarcodes
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see DNABarcodes.
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
Bioconductor version: 3.2
The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.
Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>
Citation (from within R,
enter citation("DNABarcodes")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNABarcodes")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNABarcodes")
| HTML | DNABarcodes | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Preprocessing, Sequencing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | GPL-2 |
| Depends | Matrix, parallel |
| Imports | Rcpp (>= 0.11.2), BH |
| LinkingTo | Rcpp, BH |
| Suggests | knitr, BiocStyle, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DNABarcodes_1.0.0.tar.gz |
| Windows Binary | DNABarcodes_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | DNABarcodes_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | DNABarcodes_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DNABarcodes/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/DNABarcodes/ |
| Package Downloads Report | Download Stats |
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