To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

In most cases, you don't need to download the package archive at all.

DECIPHER

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see DECIPHER.

Database Enabled Code for Ideal Probe Hybridization Employing R

Bioconductor version: 3.2

A toolset for deciphering and managing biological sequences.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Citation (from within R, enter citation("DECIPHER")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")

PDF		Design Group-Specific FISH Probes
PDF		Design Group-Specific Primers
PDF		Design Microarray Probes
PDF		Design Primers That Yield Group-Specific Signatures
PDF		Finding Chimeric Sequences
PDF		Getting Started DECIPHERing
PDF		The Art of Multiple Sequence Alignment in R
PDF		Reference Manual

biocViews	Alignment, Clustering, DataImport, Genetics, Microarray, Microbiome, QualityControl, Sequencing, Software, Visualization, WholeGenome, qPCR
Version	1.16.1
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	GPL-3
Depends	R (>= 2.13.0), Biostrings(>= 2.35.12), RSQLite (>= 1.0.0), stats, parallel
Imports	methods, DBI, S4Vectors, IRanges, XVector
LinkingTo	Biostrings, RSQLite, S4Vectors, IRanges, XVector
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	DECIPHER_1.16.1.tar.gz
Windows Binary	DECIPHER_1.16.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DECIPHER_1.16.0.tgz
Mac OS X 10.9 (Mavericks)	DECIPHER_1.16.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/DECIPHER/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/DECIPHER/
Package Downloads Report	Download Stats