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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNTools")
In most cases, you don't need to download the package archive at all.
CNTools
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see CNTools.
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Bioconductor version: 3.2
This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data
Author: Jianhua Zhang
Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>
Citation (from within R,
enter citation("CNTools")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNTools")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNTools")
| NCTools HowTo | ||
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (6.5 years) |
| License | LGPL |
| Depends | R (>= 2.10), methods, tools, stats, genefilter |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | cghMCR |
| Imports Me | TCGAbiolinks |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CNTools_1.26.0.tar.gz |
| Windows Binary | CNTools_1.26.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | CNTools_1.26.0.tgz |
| Mac OS X 10.9 (Mavericks) | CNTools_1.26.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CNTools/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/CNTools/ |
| Package Downloads Report | Download Stats |
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