To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiGGR")
In most cases, you don't need to download the package archive at all.
BiGGR
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see BiGGR.
Constraint based modeling in R using metabolic reconstruction databases
Bioconductor version: 3.2
This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.
Author: Anand K. Gavai, Hannes Hettling
Maintainer: Anand K. Gavai <anand.gavai at bioinformatics.nl>, Hannes Hettling <hannes.hettling at naturalis.nl>
Citation (from within R,
enter citation("BiGGR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiGGR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiGGR")
| BiGGR | ||
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GraphAndNetwork, Metabolomics, Network, Pathway, Software, Systems Biology, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
| License | file LICENSE |
| Depends | R (>= 2.14.0), rsbml, hyperdraw, LIM, stringr |
| Imports | hypergraph |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioconductor.org/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | BiGGR_1.6.0.tar.gz |
| Windows Binary | BiGGR_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | BiGGR_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | BiGGR_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/BiGGR/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/BiGGR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
