To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHubData")

In most cases, you don't need to download the package archive at all.

AnnotationHubData

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see AnnotationHubData.

Transform public data resources into Bioconductor Data Structures

Bioconductor version: 3.2

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHubData")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHubData")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationHubData")

HTML		The AnnotationHubData Package
PDF		Reference Manual
Text		NEWS

biocViews	DataImport, Software
Version	1.0.2
In Bioconductor since	BioC 3.2 (R-3.2) (0.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.2), methods, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub
Imports	GenomicFeatures, Rsamtools, rtracklayer, RCurl, BiocGenerics, jsonlite, BiocInstaller, httr, AnnotationDbi, Biobase, Biostrings, DBI, GEOquery, GenomeInfoDb, OrganismDbi, RSQLite, rBiopaxParser, AnnotationForge, futile.logger (>= 1.3.0), XML, xml2
LinkingTo
Suggests	RUnit, knitr, RMySQL, BiocStyle, grasp2db
SystemRequirements
Enhances
URL
Depends On Me	ProteomicsAnnotationHubData
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	AnnotationHubData_1.0.2.tar.gz
Windows Binary	AnnotationHubData_1.0.2.zip
Mac OS X 10.6 (Snow Leopard)	AnnotationHubData_1.0.0.tgz
Mac OS X 10.9 (Mavericks)	AnnotationHubData_1.0.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AnnotationHubData/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/AnnotationHubData/
Package Downloads Report	Download Stats

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