To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AIMS")
In most cases, you don't need to download the package archive at all.
AIMS
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see AIMS.
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
Bioconductor version: 3.2
This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.
Author: Eric R. Paquet, Michael T. Hallett
Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>
Citation (from within R,
enter citation("AIMS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AIMS")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AIMS")
| AIMS An Introduction (HowTo) | ||
| Reference Manual | ||
| Text | README |
Details
| biocViews | Classification, GeneExpression, Microarray, RNASeq, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), e1071, Biobase |
| Imports | |
| LinkingTo | |
| Suggests | breastCancerVDX, hgu133a.db, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bci.mcgill.ca/AIMS |
| Depends On Me | genefu |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | AIMS_1.2.0.tar.gz |
| Windows Binary | AIMS_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | AIMS_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | AIMS_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/AIMS/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/AIMS/ |
| Package Downloads Report | Download Stats |
Documentation »
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