To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABSSeq")
In most cases, you don't need to download the package archive at all.
ABSSeq
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see ABSSeq.
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Bioconductor version: 3.2
Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.
Author: Wentao Yang
Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>
Citation (from within R,
enter citation("ABSSeq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABSSeq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ABSSeq")
| ABSSeq | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, Software |
| Version | 1.6.1 |
| In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
| License | GPL (>= 3) |
| Depends | R (>= 2.10), methods |
| Imports | locfit, limma |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ABSSeq_1.6.1.tar.gz |
| Windows Binary | ABSSeq_1.6.1.zip |
| Mac OS X 10.6 (Snow Leopard) | ABSSeq_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | ABSSeq_1.6.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ABSSeq/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/ABSSeq/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
