canceR

DOI: 10.18129/B9.bioc.canceR  

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Bioconductor version: Release (3.17)

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("canceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("canceR")

 

HTML	R Script	canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GO, GUI, GeneExpression, GeneSetEnrichment, KEGG, MultipleComparison, Software
Version	1.34.0
In Bioconductor since	BioC 3.1 (R-3.2) (8.5 years)
License	GPL-2
Depends	R (>= 4.1), tcltk
Imports	GSEABase, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils, grDevices, R.oo, R.methodsS3, httr
LinkingTo
Suggests	testthat (>= 3.1), knitr, rmarkdown, BiocStyle
SystemRequirements	Tktable, BWidget
Enhances
URL
BugReports	https://github.com/kmezhoud/canceR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	canceR_1.34.0.tar.gz
Windows Binary	canceR_1.34.0.zip
macOS Binary (x86_64)	canceR_1.34.0.tgz
macOS Binary (arm64)	canceR_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/canceR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/canceR
Bioc Package Browser	https://code.bioconductor.org/browse/canceR/
Package Short Url	https://bioconductor.org/packages/canceR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive