NBSplice

DOI: 10.18129/B9.bioc.NBSplice  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see NBSplice.

Negative Binomial Models to detect Differential Splicing

Bioconductor version: Release (3.17)

The package proposes a differential splicing evaluation method based on isoform quantification. It applies generalized linear models with negative binomial distribution to infer changes in isoform relative expression.

Author: Gabriela A. Merino and Elmer A. Fernandez

Maintainer: Gabriela Merino <merino.gabriela33 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NBSplice")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ImmunoOncology, RNASeq, Regression, Software, StatisticalMethod
Version	1.18.0
In Bioconductor since	BioC 3.8 (R-3.5) (5 years)
License	GPL (>=2)
Depends	R (>= 3.5), methods
Imports	edgeR, stats, MASS, car, mppa, BiocParallel, ggplot2, reshape2
LinkingTo
Suggests	knitr, RUnit, BiocGenerics, BiocStyle, rmarkdown, markdown
SystemRequirements
Enhances
URL	http://www.bdmg.com.ar
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/NBSplice
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NBSplice
Package Short Url	https://bioconductor.org/packages/NBSplice/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive