GOSim

DOI: 10.18129/B9.bioc.GOSim  

Computation of functional similarities between GO terms and gene products; GO enrichment analysis

Bioconductor version: Release (3.17)

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSim")

 

PDF	R Script	GOsim
PDF		Reference Manual

Details

biocViews	Clustering, GO, Pathways, Software
Version	1.38.0
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL (>= 2)
Depends	GO.db, annotate
Imports	org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
LinkingTo	Rcpp
Suggests
SystemRequirements
Enhances	igraph
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GOSim_1.38.0.tar.gz
Windows Binary	GOSim_1.38.0.zip
macOS Binary (x86_64)	GOSim_1.38.0.tgz
macOS Binary (arm64)	GOSim_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GOSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GOSim
Bioc Package Browser	https://code.bioconductor.org/browse/GOSim/
Package Short Url	https://bioconductor.org/packages/GOSim/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.17	Source Archive