ChIPexoQualExample

DOI: 10.18129/B9.bioc.ChIPexoQualExample    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ChIPexoQualExample.

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Bioconductor version: 3.15

Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.

Author: Rene Welch, Dongjun Chung, Sunduz Keles

Maintainer: Rene Welch <welch at stat.wisc.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPexoQualExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPexoQualExample")

 

HTML	R Script	ChIPexoQualExample
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, Genome
Version	1.20.0
License	GPL (>= 2)
Depends	R (>= 3.3)
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	http://www.github.com/keleslab/ChIPexoQualExample
Depends On Me
Imports Me
Suggests Me	ChIPexoQual
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ChIPexoQualExample_1.20.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/ChIPexoQualExample
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ChIPexoQualExample
Package Short Url	https://bioconductor.org/packages/ChIPexoQualExample/
Package Downloads Report	Download Stats