TxDb.Hsapiens.UCSC.hg19.knownGene

DOI: 10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg19.knownGene.

Annotation package for TxDb object(s)

Bioconductor version: 3.15

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, TxDb
Version	3.2.2
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.21.30)
Imports	AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	annotation, FDb.InfiniumMethylation.hg19, Homo.sapiens, variants, vulcan
Imports Me	appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, HiLDA, musicatk, nearBynding, profileplyr, RareVariantVis, rCGH, UMI4Cats, uncoverappLib
Suggests Me	AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, borealis, bumphunter, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, EpiCompare, epimutacions, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GRaNIE, groHMM, GUIDEseq, gwascat, HTSeqGenie, InPAS, karyoploteR, MAST, MesKit, MutationalPatterns, NoRCE, OUTRIDER, pageRank, plotgardener, ProteoDisco, PureCN, R3CPET, ramr, regionReport, RiboProfiling, RLSeq, rtracklayer, SGSeq, SigFuge, spatzie, SplicingGraphs, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, TCGAutils, TFEA.ChIP, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
macOS Binary (x86_64)
Package Short Url	https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
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