This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see piano.
Bioconductor version: 3.15
Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.
Author: Leif Varemo Wigge <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>
Maintainer: Leif Varemo Wigge <piano.rpkg at gmail.com>
Citation (from within R,
enter citation("piano")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("piano")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("piano")
R Script | Piano - Platform for Integrative Analysis of Omics data | |
HTML | R Script | Running gene-set anaysis with piano |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization |
Version | 2.12.1 |
In Bioconductor since | BioC 2.12 (R-3.0) (9.5 years) |
License | GPL (>=2) |
Depends | R (>= 3.5) |
Imports | BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea, shiny, DT, htmlwidgets, shinyjs, shinydashboard, visNetwork, scales, grDevices, graphics, stats, utils, methods |
LinkingTo | |
Suggests | yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi, knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | http://www.sysbio.se/piano |
BugReports | https://github.com/varemo/piano/issues |
Depends On Me | |
Imports Me | CoreGx, PDATK |
Suggests Me | BloodCancerMultiOmics2017, cosmosR |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | piano_2.12.1.tar.gz |
Windows Binary | piano_2.12.1.zip |
macOS Binary (x86_64) | piano_2.12.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/piano |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/piano |
Package Short Url | https://bioconductor.org/packages/piano/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: