mbOmic

DOI: 10.18129/B9.bioc.mbOmic    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see mbOmic.

Integrative analysis of the microbiome and metabolome

Bioconductor version: 3.15

The mbOmic package contains a set of analysis functions for microbiomics and metabolomics data, designed to analyze the inter-omic correlation between microbiology and metabolites. Integrative analysis of the microbiome and metabolome is the aim of mbOmic. Additionally, the identification of enterotype using the gut microbiota abundance is preliminaryimplemented.

Author: Congcong Gong [aut, cre]

Maintainer: Congcong Gong <congconggong33 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mbOmic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mbOmic")

 

HTML	R Script	enterotyping
HTML	R Script	Integrative analysis of metabolome and microbiome
PDF		Reference Manual
Text		NEWS

Details

biocViews	Metabolomics, Microbiome, Network, Software
Version	1.0.0
In Bioconductor since	BioC 3.15 (R-4.2) (0.5 years)
License	Artistic-2.0
Depends	R (>= 4.1.0)
Imports	parallel, doParallel, psych, WGCNA, data.table, igraph, visNetwork, cluster, clusterSim, methods, graphics, stats
LinkingTo
Suggests	testthat (>= 3.0.0), knitr, rmarkdown, devtools, impute
SystemRequirements
Enhances
URL	https://github.com/gongcongcong/mbOmic
BugReports	https://github.com/gongcongcong/mbOmic/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mbOmic_1.0.0.tar.gz
Windows Binary	mbOmic_1.0.0.zip
macOS Binary (x86_64)	mbOmic_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mbOmic
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mbOmic
Package Short Url	https://bioconductor.org/packages/mbOmic/
Package Downloads Report	Download Stats